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Systematics & Phylogenetic Software

General Websites

  • http://taxonomy.zoology.gla.ac.uk/software.html
  • http://evolution.genetics.washington.edu/phylip/software.html
  • http://www.nickrentlab.siu.edu/SystematicsLinks.html

Phylogenetic Inference

  • T.N.T.
  • PAUP
  • PHYLIP
  • MrBayes

Sequence Alignment

  • Align
  • Clustal
  • KAlign
  • MAFFT
  • MUSCLE
  • T-Coffee

Biogeography

  • Digital Taxonomy – Biogeography and GIS
  • University of Oregon Geography Dept.

Character Evolution/Tree Manipulation

  • MacClade
  • Mesquite
  • Treeview
  • WinClada

Specimen Databasing

  • Biota
  • Mantis
  • Mandala
  • Specify
  • Species File Software (SFS)

Digital Keys

  • 3I Digital Keys and Taxonomic Databases
  • Delta/IntKey
  • Discover Life
  • LUCID

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Thank you to our 2024 corporate, institutional and personal sponsors! We could not do this without your support.

Recordings of past meetings are available on the ECN YouTube
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